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//! A module for reading and writing TFRecords, Tensorflow's preferred on-disk data format.
//!
//! See the [tensorflow docs](https://www.tensorflow.org/api_guides/python/python_io#tfrecords-format-details)
//! for details of this format.
use byteorder::{ByteOrder, LittleEndian, ReadBytesExt, WriteBytesExt};
use crc::Crc;
use crc::CRC_32_ISCSI;
use std::{
error::Error,
fmt, io,
io::{Read, Seek, SeekFrom, Write},
};
fn mask_crc(crc: u32) -> u32 {
((crc >> 15) | (crc << 17)).wrapping_add(0xa282_ead8u32)
}
const CASTAGNOLI: Crc<u32> = Crc::<u32>::new(&CRC_32_ISCSI);
/// A type for writing bytes in the TFRecords format.
#[derive(Debug)]
pub struct RecordWriter<W: Write> {
writer: W,
}
impl<W> RecordWriter<W>
where
W: Write,
{
/// Construct a new RecordWriter which writes to `writer`.
pub fn new(writer: W) -> Self {
RecordWriter { writer }
}
/// Write a complete TFRecord.
pub fn write_record(&mut self, bytes: &[u8]) -> io::Result<()> {
/* A TFRecords file contains a sequence of strings
with CRC32C (32-bit CRC using the Castagnoli polynomial) hashes. Each record has the format
uint64 length
uint32 masked_crc32_of_length
byte data[length]
uint32 masked_crc32_of_data
and the records are concatenated together to produce the file. CRCs are described here [1],
and the mask of a CRC is :
masked_crc = ((crc >> 15) | (crc << 17)) + 0xa282ead8ul
[1] https://en.wikipedia.org/wiki/Cyclic_redundancy_check
*/
let mut len_bytes = [0u8; 8];
(&mut len_bytes[..]).write_u64::<LittleEndian>(bytes.len() as u64)?;
let masked_len_crc32c = mask_crc(CASTAGNOLI.checksum(&len_bytes));
let mut len_crc32_bytes = [0u8; 4];
(&mut len_crc32_bytes[..]).write_u32::<LittleEndian>(masked_len_crc32c)?;
let masked_bytes_crc32c = mask_crc(CASTAGNOLI.checksum(bytes));
let mut bytes_crc32_bytes = [0u8; 4];
(&mut bytes_crc32_bytes[..]).write_u32::<LittleEndian>(masked_bytes_crc32c)?;
self.writer.write_all(&len_bytes)?;
self.writer.write_all(&len_crc32_bytes)?;
self.writer.write_all(bytes)?;
self.writer.write_all(&bytes_crc32_bytes)?;
Ok(())
}
}
#[derive(Debug)]
/// The possible errors from a record read attempt
pub enum RecordReadError {
/// This record is corrupt (failed a checksum), but we might be able to recover.
/// A subsequent call to read_next() might yield the next record.
CorruptRecord,
/// The entire file is corrupted. This is a terminal error.
CorruptFile,
/// There was an underlying io error. Depending on the source of the error, this may be a
/// a transient or permanent failure.
IoError {
/// The underlying io::Error
source: io::Error,
},
/// The supplied buffer was too short to contain the next record.
BufferTooShort {
/// The length of the record that was too long to read.
needed: u64,
},
}
impl From<io::Error> for RecordReadError {
fn from(from: io::Error) -> RecordReadError {
RecordReadError::IoError { source: from }
}
}
impl Error for RecordReadError {
fn source(&self) -> Option<&(dyn Error + 'static)> {
match self {
RecordReadError::IoError { source } => Some(source),
_ => None,
}
}
}
impl fmt::Display for RecordReadError {
fn fmt(&self, f: &mut fmt::Formatter<'_>) -> fmt::Result {
write!(f, "{:?}", self)
}
}
/// A type for deserializing TFRecord formats
#[derive(Debug)]
pub struct RecordReader<R: Read + Seek> {
reader: R,
}
impl<R> RecordReader<R>
where
R: Read + Seek,
{
/// Construct a new RecordReader from an underlying Read.
pub fn new(reader: R) -> Self {
RecordReader { reader }
}
fn read_next_len_unchecked(&mut self) -> Result<Option<u64>, RecordReadError> {
match self.reader.read_u64::<LittleEndian>() {
Err(e) => {
if e.kind() == io::ErrorKind::UnexpectedEof {
Ok(None)
} else {
Err(e.into())
}
}
Ok(val) => Ok(Some(val)),
}
}
fn checksum(&mut self, bytes: &[u8]) -> Result<bool, RecordReadError> {
let actual_bytes_crc32 = mask_crc(CASTAGNOLI.checksum(bytes));
let expected_bytes_crc32 = self.reader.read_u32::<LittleEndian>()?;
if actual_bytes_crc32 != expected_bytes_crc32 {
return Ok(false);
}
Ok(true)
}
fn read_bytes_exact_unchecked(&mut self, buf: &mut [u8]) -> Result<(), RecordReadError> {
self.reader.read_exact(buf)?;
Ok(())
}
/// The length of the next record. Does not checksum the length.
/// Use this to find out how large the byte slice needs to be to read the next record.
pub fn peek_next_len(&mut self) -> Result<Option<u64>, RecordReadError> {
let len = self.read_next_len_unchecked()?;
if len.is_some() {
self.reader.seek(SeekFrom::Current(-8))?;
}
Ok(len)
}
/// Read the next record into a byte slice.
/// Returns the number of bytes read, if successful.
/// Returns None, if it could read exactly 0 bytes (indicating EOF)
///
/// # Examples
/// ```
/// // When we are sure of the max item size, we can just stack allocate an array to hold
/// use tensorflow::io::{RecordReadError, RecordReader, RecordWriter};
/// use std::{io::Cursor, rc::Rc};
/// let mut buf = Vec::new();
/// let mut rc = Rc::new(&mut buf);
/// let records = vec!["foo", "barr", "baz"];
/// {
/// let mut writer = RecordWriter::new(Rc::get_mut(&mut rc).unwrap());
/// for rec in records.iter() {
/// writer.write_record(rec.as_bytes()).unwrap();
/// }
/// }
/// let read = std::io::BufReader::new(Cursor::new(buf));
/// let mut reader = RecordReader::new(read);
/// let mut ary = [0u8; 4];
/// let mut i = 0;
/// loop {
/// let next = reader.read_next(&mut ary);
/// match next {
/// Ok(res) => match res {
/// Some(len) => assert_eq!(&ary[0..len], records[i].as_bytes()),
/// None => break,
/// },
/// Err(RecordReadError::CorruptFile) | Err(RecordReadError::IoError { .. }) => {
/// break;
/// }
/// _ => {}
/// }
/// i += 1;
/// }
/// ```
/// When we may need to dynamically resize our buffer, use this peek_next_len()
/// ```
/// use tensorflow::io::{RecordReadError, RecordReader, RecordWriter};
/// use std::{io::Cursor, rc::Rc};
/// let mut buf = Vec::new();
/// let mut rc = Rc::new(&mut buf);
/// let records = vec!["foo", "barr", "baz"];
/// {
/// let mut writer = RecordWriter::new(Rc::get_mut(&mut rc).unwrap());
/// for rec in records.iter() {
/// writer.write_record(rec.as_bytes()).unwrap();
/// }
/// }
/// let read = std::io::BufReader::new(Cursor::new(buf));
/// let mut reader = RecordReader::new(read);
/// let mut vec = Vec::new();
/// while let Ok(Some(len)) = reader.peek_next_len() {
/// let len = len as usize;
/// if vec.len() < len {
/// vec.resize(len, 0);
/// }
/// let next = reader.read_next(&mut vec[0..len]);
/// assert_eq!(next.unwrap().unwrap(), len);
/// // &vec[0..len] contains the bytes of this record
/// }
/// assert_eq!(vec.len(), 4);
/// ```
///
pub fn read_next(&mut self, buf: &mut [u8]) -> Result<Option<usize>, RecordReadError> {
let len = match self.read_next_len_unchecked()? {
Some(len) => len,
None => return Ok(None),
};
if (buf.len() as u64) < len {
self.reader.seek(SeekFrom::Current(8 + len as i64))?;
return Err(RecordReadError::BufferTooShort { needed: len });
}
let mut len_bytes = [0u8; 8];
LittleEndian::write_u64(&mut len_bytes, len);
if !self.checksum(&len_bytes)? {
return Err(RecordReadError::CorruptFile);
}
let slice = &mut buf[0..len as usize];
self.read_bytes_exact_unchecked(slice)?;
if self.checksum(slice)? {
Ok(Some(len as usize))
} else {
Err(RecordReadError::CorruptRecord)
}
}
/// Allocate a Vec<u8> on the heap and read the next record into it.
/// Returns the filled Vec, if successful.
/// Returns None, if it could read exactly 0 bytes (indicating EOF)
/// # Example
/// ```
/// use tensorflow::io::{RecordReadError, RecordReader, RecordWriter};
/// use std::{io::Cursor, rc::Rc};
/// let mut buf = Vec::new();
/// let mut rc = Rc::new(&mut buf);
/// let records = vec!["foo", "barr", "baz"];
/// {
/// let mut writer = RecordWriter::new(Rc::get_mut(&mut rc).unwrap());
/// for rec in records.iter() {
/// writer.write_record(rec.as_bytes()).unwrap();
/// }
/// }
/// let read = std::io::BufReader::new(Cursor::new(buf));
/// let mut reader = RecordReader::new(read);
/// let mut i = 0;
/// loop {
/// let next = reader.read_next_owned();
/// match next {
/// Ok(res) => match res {
/// Some(vec) => assert_eq!(&vec[..], records[i].as_bytes()),
/// None => break,
/// },
/// Err(RecordReadError::CorruptFile) | Err(RecordReadError::IoError { .. }) => {
/// break;
/// }
/// _ => {}
/// }
/// i += 1;
/// }
/// ```
pub fn read_next_owned(&mut self) -> Result<Option<Vec<u8>>, RecordReadError> {
let len = match self.read_next_len_unchecked()? {
Some(len) => len,
None => return Ok(None),
};
let mut len_bytes = [0u8; 8];
LittleEndian::write_u64(&mut len_bytes, len);
if !self.checksum(&len_bytes)? {
return Err(RecordReadError::CorruptFile);
}
let mut vec = vec![0u8; len as usize];
self.read_bytes_exact_unchecked(&mut vec)?;
if self.checksum(&vec)? {
Ok(Some(vec))
} else {
Err(RecordReadError::CorruptRecord)
}
}
/// Convert the Reader into an Iterator<Item = Result<Vec<u8>, RecordReadError>, which iterates
/// the whole Read. Stops if it finds whole-file corruption.
/// # Example
/// ```
/// use tensorflow::io::{RecordWriter, RecordReader};
/// let records = vec!["Foo bar baz", "boom bing bang", "sum soup shennaninganner"];
/// let path = "test_resources/io/roundtrip.tfrecord";
/// let out = ::std::fs::OpenOptions::new()
/// .write(true)
/// .create(true)
/// .open(path)
/// .unwrap();
/// {
/// let mut writer = RecordWriter::new(out);
/// for rec in records.iter() {
/// writer.write_record(rec.as_bytes()).unwrap();
/// }
/// }
/// {
/// let actual = ::std::fs::OpenOptions::new().read(true).open(path).unwrap();
/// let reader = RecordReader::new(actual);
/// for (actual, expected) in reader.into_iter_owned().zip(records) {
/// assert_eq!(actual.unwrap(), expected.as_bytes());
/// }
/// }
/// {
/// let actual = ::std::fs::OpenOptions::new().read(true).open(path).unwrap();
/// let reader = RecordReader::new(actual);
/// assert_eq!(reader.into_iter_owned().count(), 3);
/// }
/// let _ = std::fs::remove_file(path);
/// ```
pub fn into_iter_owned(self) -> impl Iterator<Item = Result<Vec<u8>, RecordReadError>> {
RecordOwnedIterator { records: self }
}
}
struct RecordOwnedIterator<R: Read + Seek> {
records: RecordReader<R>,
}
impl<R: Read + Seek> Iterator for RecordOwnedIterator<R> {
type Item = Result<Vec<u8>, RecordReadError>;
fn next(&mut self) -> Option<Self::Item> {
match self.records.read_next_owned().transpose() {
Some(Err(RecordReadError::CorruptFile)) => None,
rest => rest,
}
}
}
////////////////////////
#[cfg(test)]
mod tests {
use super::*;
use std::fs::File;
use std::io::Read;
#[test]
fn writer_identical_to_python() {
let actual_filename = "test_resources/io/actual.tfrecord";
// This file was generated by test_resources/io/python_writer.py
let expected_filename = "test_resources/io/expected.tfrecord";
{
let f = ::std::fs::OpenOptions::new()
.write(true)
.create(true)
.open(actual_filename)
.unwrap();
let mut record_writer = RecordWriter::new(::std::io::BufWriter::new(f));
record_writer
.write_record("The Quick Brown Fox".as_bytes())
.unwrap();
}
{
let mut af = File::open(actual_filename).unwrap();
let mut ef = File::open(expected_filename).unwrap();
let mut actual = vec![0; 0];
let mut expected = vec![0; 0];
af.read_to_end(&mut actual).unwrap();
ef.read_to_end(&mut expected).unwrap();
assert_eq!(actual, expected);
}
let _ = std::fs::remove_file(actual_filename);
}
#[test]
fn peek_next() {
use std::{io::Cursor, rc::Rc};
let mut buf = Vec::new();
let mut rc = Rc::new(&mut buf);
let records = vec!["foo", "barr", "baz"];
{
let mut writer = RecordWriter::new(Rc::get_mut(&mut rc).unwrap());
for rec in records.iter() {
writer.write_record(rec.as_bytes()).unwrap();
}
}
let read = std::io::BufReader::new(Cursor::new(buf));
let mut reader = RecordReader::new(read);
let mut ary = [0u8; 4];
let mut i = 0;
loop {
if i < 3 {
assert_eq!(
reader.peek_next_len().unwrap().unwrap() as usize,
records[i].len()
);
}
if i == 3 {
assert!(reader.peek_next_len().unwrap().is_none());
}
let next = reader.read_next(&mut ary);
match next {
Ok(res) => match res {
Some(len) => assert_eq!(&ary[0..len], records[i].as_bytes()),
None => break,
},
Err(e @ _) => {
panic!("Received an unexpected error: {:?}", e);
}
}
i += 1;
}
}
#[test]
fn seek_over_too_long() {
use std::{io::Cursor, rc::Rc};
let mut buf = Vec::new();
let mut rc = Rc::new(&mut buf);
let records = vec!["foo", "barr", "baz"];
{
let mut writer = RecordWriter::new(Rc::get_mut(&mut rc).unwrap());
for rec in records.iter() {
writer.write_record(rec.as_bytes()).unwrap();
}
}
let read = std::io::BufReader::new(Cursor::new(buf));
let mut reader = RecordReader::new(read);
let mut ary = [0u8; 3];
let next = reader.read_next(&mut ary);
assert_eq!(next.unwrap().unwrap(), 3);
assert_eq!(&ary, records[0].as_bytes());
let next = reader.read_next(&mut ary);
let buffer_too_short = match next {
Err(RecordReadError::BufferTooShort { needed: v }) => v == 4,
_ => false,
};
assert!(buffer_too_short);
let next = reader.read_next(&mut ary);
assert_eq!(next.unwrap().unwrap(), 3);
assert_eq!(&ary, records[2].as_bytes());
let next = reader.read_next(&mut ary);
assert!(next.unwrap().is_none());
}
}